Publications

Johannes C. Hingerl*, Laura D. Martens*, Alexander Karollus, Trevor Manz, Jason D. Buenrostro, Fabian J. Theis, Julien Gagneur (2024). scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution. bioRxiv.
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Laura D. Martens, David S. Fischer, Vicente A. Yépez, Fabian J. Theis, Julien Gagneur (2024). Modeling fragment counts improves single-cell ATAC-seq analysis. Nature Methods.
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Anna B. Meier*, Dorota Zawada*, Maria Teresa De Angelis*, Laura D. Martens*, Gianluca Santamaria*, Sophie Zengerle, Monika Nowak-Imialek, Jessica Kornherr, Fangfang Zhang, Qinghai Tian, Cordula M. Wolf, Christian Kupatt, Makoto Sahara, Peter Lipp, Fabian J. Theis, Julien Gagneur, Alexander Goedel, Karl-Ludwig Laugwitz, Tatjana Dorn, Alessandra Moretti (2023). Epicardioid single-cell genomics uncovers principles of human epicardium biology in heart development and disease. Nature Biotechnology.
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Lukas Heumos, Anna C. Schaar, Christopher Lance, Anastasia Litinetskaya, Felix Drost, Luke Zappia, Malte D. Lücken, Daniel C. Strobl, Juan Henao, Fabiola Curion, Single-Cell Best Practices Consortium, Herbert B. Schiller, Fabian J. Theis (2023). Best practices for single-cell analysis across modalities. Nature Reviews Genetics.
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